Taxonomy and multi-locus phylogeny of cylindrocarpon-like species associated with diseased roots of grapevine and other fruit and nut crops in California.
Identifieur interne : 000130 ( Main/Exploration ); précédent : 000129; suivant : 000131Taxonomy and multi-locus phylogeny of cylindrocarpon-like species associated with diseased roots of grapevine and other fruit and nut crops in California.
Auteurs : D P Lawrence [États-Unis] ; M T Nouri [États-Unis] ; F P Trouillas [États-Unis]Source :
- Fungal systematics and evolution [ 2589-3831 ] ; 2019.
Abstract
Black foot disease is a common and destructive root disease of grapevine caused by a multitude of cylindrocarpon-like fungi in many viticultural areas of the world. This study identified 12 cylindrocarpon-like fungal species across five genera associated with black foot disease of grapevine and other diverse root diseases of fruit and nut crops in the Central Valley Region of California. Morphological observations paired with multi-locus sequence typing of four loci, internal transcribed spacer region of nuclear rDNA ITS1-5.8S-ITS2 (ITS), beta-tubulin (TUB2), translation elongation factor 1-alpha (TEF1), and histone (HIS), revealed 10 previously described species; Campylocarpon fasciculare, Dactylonectriaalcacerensis, D. ecuadoriensis, D. macrodidyma, D. novozelandica, D. torresensis, D. valentina, Ilyonectriacapensis, I. liriodendri, I. robusta, and two new species, Neonectria californica sp. nov., and Thelonectria aurea sp. nov. Phylogenetic analyses of the ITS+TUB2+TEF1 combined dataset, a commonly employed dataset used to identify filamentous ascomycete fungi, was unable to assign some species, with significant support, in the genus Dactylonectria, while all other species in other genera were confidently identified. The HIS marker was essential either singly or in conjunction with the aforementioned genes for accurate identification of most Dactylonectria species. Results from isolations of diseased plant tissues revealed potential new host associations for almost all fungi recovered in this study. This work is the basis for future studies on the epidemiology and biology of these important and destructive plant pathogens.
DOI: 10.3114/fuse.2019.04.06
PubMed: 32467907
PubMed Central: PMC7241681
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Taxonomy and multi-locus phylogeny of cylindrocarpon-like species associated with diseased roots of grapevine and other fruit and nut crops in California.</title><author><name sortKey="Lawrence, D P" sort="Lawrence, D P" uniqKey="Lawrence D" first="D P" last="Lawrence">D P Lawrence</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Nouri, M T" sort="Nouri, M T" uniqKey="Nouri M" first="M T" last="Nouri">M T Nouri</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, University of California, Kearney Agricultural Research and Extension Center, Parlier, CA 93648, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, University of California, Kearney Agricultural Research and Extension Center, Parlier, CA 93648</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Trouillas, F P" sort="Trouillas, F P" uniqKey="Trouillas F" first="F P" last="Trouillas">F P Trouillas</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2019">2019</date><idno type="RBID">pubmed:32467907</idno><idno type="pmid">32467907</idno><idno type="doi">10.3114/fuse.2019.04.06</idno><idno type="pmc">PMC7241681</idno><idno type="wicri:Area/Main/Corpus">000079</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000079</idno><idno type="wicri:Area/Main/Curation">000079</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000079</idno><idno type="wicri:Area/Main/Exploration">000079</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Taxonomy and multi-locus phylogeny of cylindrocarpon-like species associated with diseased roots of grapevine and other fruit and nut crops in California.</title><author><name sortKey="Lawrence, D P" sort="Lawrence, D P" uniqKey="Lawrence D" first="D P" last="Lawrence">D P Lawrence</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Nouri, M T" sort="Nouri, M T" uniqKey="Nouri M" first="M T" last="Nouri">M T Nouri</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, University of California, Kearney Agricultural Research and Extension Center, Parlier, CA 93648, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, University of California, Kearney Agricultural Research and Extension Center, Parlier, CA 93648</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Trouillas, F P" sort="Trouillas, F P" uniqKey="Trouillas F" first="F P" last="Trouillas">F P Trouillas</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></analytic><series><title level="j">Fungal systematics and evolution</title><idno type="eISSN">2589-3831</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Black foot disease is a common and destructive root disease of grapevine caused by a multitude of cylindrocarpon-like fungi in many viticultural areas of the world. This study identified 12 cylindrocarpon-like fungal species across five genera associated with black foot disease of grapevine and other diverse root diseases of fruit and nut crops in the Central Valley Region of California. Morphological observations paired with multi-locus sequence typing of four loci, internal transcribed spacer region of nuclear rDNA ITS1-5.8S-ITS2 (ITS), beta-tubulin (<i>TUB2</i>), translation elongation factor 1-alpha (<i>TEF1</i>), and histone (<i>HIS</i>), revealed 10 previously described species; <i>Campylocarpon fasciculare</i>, <i>Dactylonectria</i><i>alcacerensis</i>, <i>D</i>. <i>ecuadoriensis</i>, <i>D</i>. <i>macrodidyma</i>, <i>D</i>. <i>novozelandica</i>, <i>D</i>. <i>torresensis</i>, <i>D</i>. <i>valentina</i>, <i>Ilyonectria</i><i>capensis</i>, <i>I</i>. <i>liriodendri</i>, <i>I</i>. <i>robusta</i>, and two new species, <i>Neonectria californica sp. nov</i>., and <i>Thelonectria aurea sp. nov</i>. Phylogenetic analyses of the ITS+<i>TUB2</i>+<i>TEF1</i> combined dataset, a commonly employed dataset used to identify filamentous ascomycete fungi, was unable to assign some species, with significant support, in the genus <i>Dactylonectria</i>, while all other species in other genera were confidently identified. The <i>HIS</i> marker was essential either singly or in conjunction with the aforementioned genes for accurate identification of most <i>Dactylonectria</i> species. Results from isolations of diseased plant tissues revealed potential new host associations for almost all fungi recovered in this study. This work is the basis for future studies on the epidemiology and biology of these important and destructive plant pathogens.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32467907</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">2589-3831</ISSN><JournalIssue CitedMedium="Internet"><Volume>4</Volume><PubDate><Year>2019</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Fungal systematics and evolution</Title><ISOAbbreviation>Fungal Syst Evol</ISOAbbreviation></Journal><ArticleTitle>Taxonomy and multi-locus phylogeny of cylindrocarpon-like species associated with diseased roots of grapevine and other fruit and nut crops in California.</ArticleTitle><Pagination><MedlinePgn>59-75</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3114/fuse.2019.04.06</ELocationID><Abstract><AbstractText>Black foot disease is a common and destructive root disease of grapevine caused by a multitude of cylindrocarpon-like fungi in many viticultural areas of the world. This study identified 12 cylindrocarpon-like fungal species across five genera associated with black foot disease of grapevine and other diverse root diseases of fruit and nut crops in the Central Valley Region of California. Morphological observations paired with multi-locus sequence typing of four loci, internal transcribed spacer region of nuclear rDNA ITS1-5.8S-ITS2 (ITS), beta-tubulin (<i>TUB2</i>), translation elongation factor 1-alpha (<i>TEF1</i>), and histone (<i>HIS</i>), revealed 10 previously described species; <i>Campylocarpon fasciculare</i>, <i>Dactylonectria</i><i>alcacerensis</i>, <i>D</i>. <i>ecuadoriensis</i>, <i>D</i>. <i>macrodidyma</i>, <i>D</i>. <i>novozelandica</i>, <i>D</i>. <i>torresensis</i>, <i>D</i>. <i>valentina</i>, <i>Ilyonectria</i><i>capensis</i>, <i>I</i>. <i>liriodendri</i>, <i>I</i>. <i>robusta</i>, and two new species, <i>Neonectria californica sp. nov</i>., and <i>Thelonectria aurea sp. nov</i>. Phylogenetic analyses of the ITS+<i>TUB2</i>+<i>TEF1</i> combined dataset, a commonly employed dataset used to identify filamentous ascomycete fungi, was unable to assign some species, with significant support, in the genus <i>Dactylonectria</i>, while all other species in other genera were confidently identified. The <i>HIS</i> marker was essential either singly or in conjunction with the aforementioned genes for accurate identification of most <i>Dactylonectria</i> species. Results from isolations of diseased plant tissues revealed potential new host associations for almost all fungi recovered in this study. This work is the basis for future studies on the epidemiology and biology of these important and destructive plant pathogens.</AbstractText><CopyrightInformation>© 2019 Westerdijk Fungal Biodiversity Institute.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lawrence</LastName><ForeName>D P</ForeName><Initials>DP</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nouri</LastName><ForeName>M T</ForeName><Initials>MT</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of California, Kearney Agricultural Research and Extension Center, Parlier, CA 93648, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Trouillas</LastName><ForeName>F P</ForeName><Initials>FP</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>05</Month><Day>27</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Fungal Syst Evol</MedlineTA><NlmUniqueID>101723577</NlmUniqueID><ISSNLinking>2589-3823</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Nectriaceae</Keyword><Keyword MajorTopicYN="N">black foot disease</Keyword><Keyword MajorTopicYN="N">new taxa</Keyword><Keyword MajorTopicYN="N">systematics</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>5</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>5</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>5</Month><Day>30</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32467907</ArticleId><ArticleId IdType="doi">10.3114/fuse.2019.04.06</ArticleId><ArticleId IdType="pmc">PMC7241681</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Phytopathology. 2003 Dec;93(12):1533-42</Citation><ArticleIdList><ArticleId IdType="pubmed">18943617</ArticleId></ArticleIdList></Reference><Reference><Citation>Fungal Biol. 2012 Jan;116(1):62-80</Citation><ArticleIdList><ArticleId IdType="pubmed">22208602</ArticleId></ArticleIdList></Reference><Reference><Citation>Stud Mycol. 2015 Mar;80:189-245</Citation><ArticleIdList><ArticleId IdType="pubmed">26955195</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 1998 Apr;82(4):448</Citation><ArticleIdList><ArticleId IdType="pubmed">30856902</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycol Res. 2008 Jan;112(Pt 1):82-92</Citation><ArticleIdList><ArticleId IdType="pubmed">18222675</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2005 Oct;89(10):1051-1059</Citation><ArticleIdList><ArticleId IdType="pubmed">30791272</ArticleId></ArticleIdList></Reference><Reference><Citation>Stud Mycol. 2006;55:213-26</Citation><ArticleIdList><ArticleId IdType="pubmed">18490981</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2013 Feb;97(2):259-270</Citation><ArticleIdList><ArticleId IdType="pubmed">30722322</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2018 Nov;102(11):2083-2100</Citation><ArticleIdList><ArticleId IdType="pubmed">30189159</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2014 Apr;98(4):456-468</Citation><ArticleIdList><ArticleId IdType="pubmed">30708694</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2012 Sep;96(9):1378</Citation><ArticleIdList><ArticleId IdType="pubmed">30727170</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2013 Dec;30(12):2725-9</Citation><ArticleIdList><ArticleId IdType="pubmed">24132122</ArticleId></ArticleIdList></Reference><Reference><Citation>IMA Fungus. 2017 Jun;8(1):65-76</Citation><ArticleIdList><ArticleId IdType="pubmed">28824840</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2007 Sep;91(9):1187-1193</Citation><ArticleIdList><ArticleId IdType="pubmed">30780661</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2007 Aug;91(8):1060</Citation><ArticleIdList><ArticleId IdType="pubmed">30780468</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycologia. 2004 May-Jun;96(3):572-97</Citation><ArticleIdList><ArticleId IdType="pubmed">21148879</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2007 Apr;91(4):470</Citation><ArticleIdList><ArticleId IdType="pubmed">30781223</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycol Res. 2009 Jan;113(Pt 1):16-23</Citation><ArticleIdList><ArticleId IdType="pubmed">18672056</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycologia. 2012 Nov-Dec;104(6):1325-50</Citation><ArticleIdList><ArticleId IdType="pubmed">22778168</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2014 Sep;98(9):1277</Citation><ArticleIdList><ArticleId IdType="pubmed">30699659</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Phylogenet Evol. 1997 Feb;7(1):103-16</Citation><ArticleIdList><ArticleId IdType="pubmed">9007025</ArticleId></ArticleIdList></Reference><Reference><Citation>Stud Mycol. 2011;68:57-78</Citation><ArticleIdList><ArticleId IdType="pubmed">21523189</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Californie</li></region></list><tree><country name="États-Unis"><region name="Californie"><name sortKey="Lawrence, D P" sort="Lawrence, D P" uniqKey="Lawrence D" first="D P" last="Lawrence">D P Lawrence</name></region><name sortKey="Nouri, M T" sort="Nouri, M T" uniqKey="Nouri M" first="M T" last="Nouri">M T Nouri</name><name sortKey="Trouillas, F P" sort="Trouillas, F P" uniqKey="Trouillas F" first="F P" last="Trouillas">F P Trouillas</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/GrapevineDiseaseV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000130 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000130 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= GrapevineDiseaseV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:32467907
|texte= Taxonomy and multi-locus phylogeny of cylindrocarpon-like species associated with diseased roots of grapevine and other fruit and nut crops in California.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:32467907" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a GrapevineDiseaseV1
| This area was generated with Dilib version V0.6.37. |  |